Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUSC rs3784584 chr15:45453032 T/C 6.12E-6 485 22.85 20.22 12.77 KM Plot
LUSC rs3843863 chr2:22912149 C/T 0 489 22.37 21.03 0.28 KM Plot
LUSC rs3860475 chr2:22912603 C/A 0 493 22.27 21.3 0.28 KM Plot
LUSC rs55999417 chr2:22907370 G/A 0 487 22.37 21.18 0.28 KM Plot
LUSC rs56113869 chr2:22909457 G/A 0 487 22.37 21.18 0.28 KM Plot
LUSC rs56233814 chr2:22911103 C/A 0 491 22.23 21.18 0.28 KM Plot
LUSC rs56273864 chr3:140945712 A/G 2.95E-6 487 22.33 21.45 12 KM Plot
LUSC rs58611583 chr2:22881278 A/G 0 490 21.73 21.77 0.28 KM Plot
LUSC rs58757994 chr2:38910869 C/T 2.66E-15 486 22.9 18.3 0.3 KM Plot
LUSC rs59639671 chr2:39003961 C/T 1.55E-15 492 22.9 16.38 0.3 KM Plot
LUSC rs614666 chr9:125753436 C/T 0 493 21.88 21.43 0.17 KM Plot
LUSC rs61493373 chr2:39014260 G/A 1.55E-15 492 22.9 16.38 0.3 KM Plot
LUSC rs6942018 chr6:100916276 A/G 3.72E-12 493 0.4 22.75 21.68 KM Plot
LUSC rs71439230 chr2:38978078 G/A 3.66E-15 479 22.6 16.7 0.3 KM Plot
LUSC rs7173906 chr15:45448864 C/T 1.92E-7 481 22.92 20.22 12.77 KM Plot